Mohammad Badar


MOHAMMAD  SUFIAN  BADAR, PhD


               1055 W. Blaine Street, Riverside, CA, 92507, USA, +13182783121


[email protected],
[email protected],
https://orcid.org/0000-0003-2390-2667


                https://scholar.google.com/citations?user=XKJDIbgAAAAJ&hl=en


https://www.researchgate.net/profile/Mohammad_Badar2



EDUCATION


 





























PhD Engineering(Concentration in Bioinformatics): 2014
Louisiana Tech University, Ruston, LA, USA
MS Molecular Science and Nanotechnology:2013
Louisiana Tech University, Ruston, LA, USA
MSc Bioinformatics: 2005
Jamia Millia Islamia, New Delhi, India
P G D Bioinformatics: 2004
Jamia Millia Islamia, New Delhi, India



Research Ongoing:


Face Detection, Recognition and Emotion Recognition by Deep Neural Network


We have developed an algorithm for Face Detection, Recognition, and Emotion Recognition using Deep Learning. Now we have developed a device by using four different types of biosensors, correlated with the emotion recognition algorithm and human physiology of the human body that can measure the temperature, skin conductivity, ECG/oxygen concentration in the blood, measuring the amount of motion, and amount of stress hormones in the body non-invasively.



Prediction and Prognosis of Breast Cancer by Machine Learning


We are designing a model using an algorithm developed using Machine Learning.
Our research proposes a model developed by different techniques of machine learning. It is a hybrid model of ensemble learning which combines the predictions of multiple models, leading to an improvement of the performance of the models. Ensemble learning uses multiple machine learning methods to try to make better predictions on a dataset. The predictions of these models are then combined in the ensemble model to make a final prediction.



Postdoctoral Fellowship (2014–2015): Bishop Molecular Modeling Lab, Louisiana Tech University, Ruston, LA, USA. Worked to develop techniques for on demand comparative genomics studies of mononucleosomes using high throughput – high performance all atom molecular dynamics simulations


 


PROFESSIONAL APPOINTMENTS


·         Teaching Faculty (Associate Professor) of Bioengineering (2016-2020): University of California, Riverside CA, USA


·         Analytics Architect (2015-2016): CenturyLink, Denver, CO, USA


 


Specialization:



  • Bioengineering and Molecular Science
  • Bioinformatics and NGS Analysis of WGS, WES, RNA-Seq, WGBS, ChIP-Seq
  • Linux Certification as Red Hat Certified System Administrator











































Software



Bioinformatics Software



Molecular Biology Tools



Material Characterization


Linux/Centos

NGS Analysis Tools for WGS, RNA-Seq, WES, WGBS, ChIP-Seq


qPCR/RNAseq XRF,  FTIR
R,  Bioconductor

Gene Prediction Tool: GENSCAN, GRAIL


DNA gels Cloning, XRD, SEM
Perl, C++

Sequence Similarity and Alignment Tool: BLAST, FASTA, Clustal W, T-Coffee


Cloning EDAX, MIP
Bio-python

Phylogenetic Prediction: DNAPARS, DNADIST, DNAML


Plasmid preps 3D Microtomography
Matlab

NEIGHBOUR, PROTPRAS, PRODIST


Secretome Analysis ADMET

 


PUBLICATIONS


Badar, M.S., Kupwade-Patil, K., Bernal, S. A., Provis, J. L., Allouche, E. N., Accelerated Carbonation Induces Corrosion of Steel Rebars in Low and High Calcium Fly Ash Geopolymer Concretes, Construction & Building Materials, Vol 61, No 49, pp. 79-89, 2014



Kupwade-Patil, K, Allouche, E.N, C.A. Watts and M.S. Badar, Selected Studies on Durability of Geopolymer Concretes, ASTM Special Technical Publication (STP), 2012



K. Kupwade-Patil*, M.S. Badar, Erez N Allouche, Evaluation of Geopolymer Concretes at Elevated Temperatures, Proceedings of the American Ceramic Society (ICACC-FS1- 019-2013), Daytona Beach, FL,USA, Feb 01, 2013



Kupwade-Patil*, M.S. Badar, E.N. Allouche, Ceramic Engineering and Science Proceedings Volume 34, Issue 10 - Developments in Strategic Materials and Computational Design
IV, ISBN: 978-1-118-80727-9, E-Book, Wiley, 336 pages, Nov, 2013



Analyzing co-clustered and functionally connected human gene pairs, Mohammad Badar, https://bioinformatics.pulsusconference.com/2018 2nd World Congress on Bioinformatics & System Biology, Dubai, UAE, October 15-16, 2018



Selected durability studies of geopolymer concrete with respect to carbonation, elevated temperature, and microbial induced corrosion, Mohammad Sufian Badar, ProQuest Dissertations And Theses; Thesis (Ph.D.)--Louisiana Tech University, Ruston, LA, USA 2014.; Publication Number: AAT 3662218; ISBN: 9781321535105; Source: Dissertation Abstracts International, Volume: 76-05(E), Section: B.; 141 p. Nov 2015



Toward Online Comparative Genomics of Mononucleosomes, T. C. Badar, M. S., Pereddy, V., Mahadasyam, P., Bishop, Aug 2014, EPSCoR 2014, Baton Rouge, LA



The Evaluation of Geopolymer Concrete against Microbial Induced Corrosion (MIC) Allouche, EN Badar, M. S., Montes, C., Minullina, R., Hindmarsh, P. L., Lvov, Y., Allouche UCT (Underground Construction Technology) 2014, Houston, TX, George R. Brown, 2014



MS Badar, Analyzing co-clustered and functionally connected human gene pairs, 2nd World Congress on Bioinformatics & System Biology, Dubai, UAE, October 15-16, 2018



Mohammad Sufian Badar, Alain Abran, Professor,
Department of Software and IT Engineering 
 

École de technologie supérieure, Canada, Prediction and Prognosis on Breast Cancer by Machine Learning, 3rd Annual Congress on Bacterial, Viral and Infectious Diseases, dated June 18-19, 2020, Dubai, UAE



Presentations


Badar, M. S., Montes, C., Hindmarsh, P. L., Allouche, E. N., Resistance of Geopolymer to Microbial Induced Corrosion, ASM2013, 113th General Meeting, American Society of Microbiology, Denver, Colorado, May 18-21, 2013



This work was also presented at: 87th Annual Meeting of Louisiana Academy of Sciences (LAS); Grambling State University, Mar 9, 2013



UCT (Underground Construction Technology) 2014, Houston, TX, Jan. 28 – 30, 2014



Badar, M. S., An Effective Instructor, American Society for Engineering Education (ASEE), Embry-Riddle Aeronautical University Daytona Beach, Florida, August 6-8, 2017



Poster Presentation


Badar, M. S., Pereddy, V., Mahadasyam, P., Bishop, T. C., Toward Online Comparative Genomics of Mononucleosomes, LA-SiGMA, Baton Rouge, LA, May 5, 2014 (Also at EPSCoR 2014, Baton Rouge, LA, Aug 18, 2014



Invited Talk/Speaker


1. Bioinformatics search tools, BLAST, Guru Nanak Dev University, Amritsar, Punjab, India, Nov 3, 2007


2. Internet of Things: Face and Emotion Detection, Maulana Azad National Urdu University, Hyderabad, India, Nov 27, 2019


3.  Association of Muslim Professionals (AMP) Online Career Guidance Seminar, July 20-30th, 2020


4. Estimation of macro human emotions using non-invasive Bio-sensors.The 2nd International Conference on Networks and Cryptology (NetCrypt), School of
 Computer & Systems Sciences, Jawaharlal Nehru University, New Delhi, India, 4-6 Dec, 2020



Book/Chapter Authoring



  1. Chapter: Applications of AI and ML in IoT, IOT-ML 2020, Security Issues in Internet of Things: Blockchain and Machine learning to the rescue, CRC Press, USA, (in press)
  2. Chapter: Molecular Dynamics Simulations: Concept, Methods, and Applications,
    2nd Volume: THINKING: Bioengineering of Science and Art, Springer Nature, USA (in press)
  3. Chapter:  IoT: Fundamentals and challenges, BC-IOT 2020 (Blockchain Applications for Secure IoT Frameworks: Technologies shaping the future), Bentham Science, (in press)
  4. Chapter: Blockchain: Concept and Emergence, BC-IOT 2020 (Blockchain Applications for Secure IoT Frameworks: Technologies shaping the future), Bentham Science, (in press)
  5. Chapter: Machine Learning Approaches in Smart Cities, Machine Intelligence and Data Analytics for Sustainable Future Smart Cities, by Springer, Publication in "Studies in Computational Intelligence", MIDATASMART 2020, (in press)
  6. Book: “Beginning Machine Learning”, Apress | Springer Science and Business Media Company, USA (in press)

 


TEACHING EXPERIENCE


Teaching Faculty (Senior), (2016-2020): Department of Bioengineering, University of California, Riverside, CA, USA


Lecturer (2006-2008): Bioinformatics, Guru Nanak Dev, University, Amritsar, India


Head (2005-2006): Bioinformatics, Singhania University, Pacheri Badi, Rajasthan, India



Courses taught: Introduction to Bioengineering, Quantitative Biochemistry, Senior Design, Dynamics of Biological Systems Biomaterials, Biomedical Imaging, Optical Imaging, Introduction to Bioinformatics, Computational Method for Sequence Analysis, Relational Database Management System, Python, Computer Application & Bioinformatics, Drug Design & Gene Therapy, Data Mining, Artificial Intelligence and Next Generation Sequencing, Computational Biology, Machine Learning, Gene Expression and Microarray Technology


Lab Course: 3D Print, Computational Modeling Software, Bioinformatics software



Research Guidance: PG Students (10), Undergraduate Students (12)



Agriculture Engineer (1996 – 2002): Ministry of Defense & Aviation, Riyadh, Saudi Arabia,



References



  1. Dr Thomas C. Bishop , Associate Professor, Department of Chemistry and Physics, Louisiana Tech University, Ruston, LA, 71270, USA, 318-257-5209, [email protected]



  1. Dr. David Mills, Professor and Director, Departments: Biological Sciences, Center for Biomedical Engineering and Rehabilitation Sciences, Louisiana Tech University, Ruston, LA, 71272, USA, (318) 257-4354, [email protected]



  1. Dr Nazimuddin M. Wasiuddin, Associate Professor of Civil Engineering, College of Engineering and Science, Louisiana Tech University, Ruston, LA, 71272, USA, (318) 257-2392/2306, [email protected]



  1. Dr Ramdas G. Pai , MD, FACC, FRCP (Edin), Professor and Chairman of Medicine, Chair of Division of Clinical Sciences, Director Cardiovascular Fellowship, School of Medicine, University of California Riverside, CA, 92521, USA, 951-827-3931, [email protected]

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